Publications

1.
Nguyen, H. D., Doo, S. S., Soars, N. A. & Byrne, M. Noncalcifying larvae in a changing ocean: Warming, not acidification/hypercapnia, is the dominant stressor on development of the sea star M eridiastra calcar. Global Change Biology 18, 2466–2476 (2012).
2.
Doo, S. S., Dworjanyn, S. A., Foo, S. A., Soars, N. A. & Byrne, M. Impacts of ocean acidification on development of the meroplanktonic larval stage of the sea urchin Centrostephanus rodgersii. ICES Journal of Marine Science 69, 460–464 (2012).
3.
Byrne, M. et al. Effects of ocean warming and acidification on embryos and non-calcifying larvae of the invasive sea star Patiriella regularis. Marine Ecology Progress Series 473, 235–246 (2013).
4.
Doo, S. S. et al. Reduced expression of the rate-limiting carbon fixation enzyme RuBisCO in the benthic foraminifer Baculogypsina sphaerulata holobiont in response to heat shock. Journal of Experimental Marine Biology and Ecology 430, 63–67 (2012).
5.
Hardy, N. A. et al. Thermal tolerance of early development in tropical and temperate sea urchins: Inferences for the tropicalization of eastern Australia. Marine Biology 161, 395–409 (2014).
6.
Doo, S. S., Mayfield, A. B., Nguyen, H. D. & Chen, H.-K. Protein analysis in large benthic foraminifera. Approaches to Study Living Foraminifera: Collection, Maintenance and Experimentation 71–89 (2014).
7.
Denis, V. et al. Can benthic algae mediate larval behavior and settlement of the coral Acropora muricata? Coral Reefs 33, 431–440 (2014).
8.
Doo, S. S., Hamylton, S. & Byrne, M. Reef-scale assessment of intertidal large benthic foraminifera populations on One Tree Island, Great Barrier Reef and their future carbonate production potential in a warming ocean. (2012).
9.
Doo, S. S., Fujita, K., Byrne, M. & Uthicke, S. Fate of calcifying tropical symbiont-bearing large benthic foraminifera: Living sands in a changing ocean. The Biological Bulletin 226, 169–186 (2014).
10.
Doo, S. S., Hamylton, S., Finfer, J. & Byrne, M. Spatial and temporal variation in reef-scale carbonate storage of large benthic foraminifera: A case study on One Tree Reef. Coral Reefs 36, 293–303 (2017).
11.
Ferrari, R. et al. 3D photogrammetry quantifies growth and external erosion of individual coral colonies and skeletons. Scientific reports 7, 16737 (2017).
12.
Doo, S. S., Carpenter, R. C. & Edmunds, P. J. Obligate ectosymbionts increase the physiological resilience of a scleractinian coral to high temperature and elevated pCO 2. Coral Reefs 37, 997–1001 (2018).
13.
Edmunds, P. et al. Why more comparative approaches are required in time-series analyses of coral reef ecosystems. Marine Ecology Progress Series 608, 297–306 (2019).
14.
Comeau, S. et al. Resistance to ocean acidification in coral reef taxa is not gained by acclimatization. Nature Climate Change 9, 477–483 (2019).
15.
Edmunds, P. J., Doo, S. S. & Carpenter, R. C. Changes in coral reef community structure in response to year-long incubations under contrasting p CO 2 regimes. Marine Biology 166, 1–12 (2019).
16.
Doo, S. S., Edmunds, P. J. & Carpenter, R. C. Ocean acidification effects on in situ coral reef metabolism. Scientific reports 9, 12067 (2019).
17.
Srednick, G. et al. Shallow coral reef free ocean carbon enrichment: Novel in situ flumes to manipulate pCO2 on shallow tropical coral reef communities. Limnology and Oceanography: Methods 18, 116–128 (2020).
18.
Edmunds, P. J., Doo, S. S. & Carpenter, R. C. Year-long effects of high pCO2 on the community structure of a tropical fore reef assembled in outdoor flumes. ICES Journal of Marine Science 77, 1055–1065 (2020).
19.
Prazeres, M. et al. High dispersal capacity and biogeographic breaks shape the genetic diversity of a globally distributed reef‐dwelling calcifier. Ecology and Evolution 10, 5976–5989 (2020).
20.
Ginther, S. C., Edmunds, P. J., Doo, S. S. & Carpenter, R. C. Prior exposure to elevated pCO2 does not affect calcification of a tropical scleractinian when returned to ambient pCO2. Journal of Experimental Marine Biology and Ecology 530, 151401 (2020).
21.
Doo, S. S. et al. Amelioration of ocean acidification and warming effects through physiological buffering of a macroalgae. Ecology and evolution 10, 8465–8475 (2020).
22.
Doo, S. S. et al. The challenges of detecting and attributing ocean acidification impacts on marine ecosystems. ICES Journal of Marine Science 77, 2411–2422 (2020).
23.
Prazeres, M. et al. Diversity and flexibility of algal symbiont community in globally distributed larger benthic foraminifera of the genus Amphistegina. BMC microbiology 21, 1–16 (2021).
24.
Narayan, G. R. et al. Response of large benthic foraminifera to climate and local changes: Implications for future carbonate production. Sedimentology 69, 121–161 (2022).
25.
Stuhr, M. et al. Divergent proteomic responses offer insights into resistant physiological responses of a reef-foraminifera to climate change scenarios. in vol. 2 281–314 (MDPI, 2021).
26.
Cornwall, C. E. et al. Global declines in coral reef calcium carbonate production under ocean acidification and warming. Proceedings of the National Academy of Sciences 118, e2015265118 (2021).
27.
Carpenter, G. E., Denis, V., Fan, T.-Y. & Doo, S. S. Effects of thermal history on the responses to thermal stress of a large benthic foraminifera, Calcarina gaudichaudii. Coral Reefs 40, 1879–1888 (2021).
28.
Westphal, H. et al. Ecosystem design as an avenue for improving services provided by carbonate producing marine ecosystems. PeerJ 10, e12785 (2022).
29.
Joppien, M., Westphal, H., Stuhr, M. & Doo, S. S. Microplastics alter feeding strategies of a coral reef organism. Limnology and Oceanography Letters 7, 131–139 (2022).
30.
Herrán, N. et al. High‐resolution imaging sheds new light on a multi‐tier symbiotic partnership between a “walking” solitary coral, a sipunculan, and a bivalve from East Africa. Ecology and Evolution 12, e8633 (2022).
31.
Khalil, M., Doo, S. S., Stuhr, M. & Westphal, H. Ocean warming amplifies the effects of ocean acidification on skeletal mineralogy and microstructure in the asterinid starfish Aquilonastra yairi. Journal of Marine Science and Engineering 10, 1065 (2022).
32.
Joppien, M., Westphal, H., Chandra, V., Stuhr, M. & Doo, S. S. Nanoplastic incorporation into an organismal skeleton. Scientific Reports 12, 14771 (2022).
33.
Khalil, M., Doo, S. S., Stuhr, M. & Westphal, H. Long-term physiological responses to combined ocean acidification and warming show energetic trade-offs in an asterinid starfish. Coral Reefs 42, 845–858 (2023).
34.
Edmunds, P. J., Doo, S. S. & Carpenter, R. C. Effects of year‐long exposure to elevated pCO2 on the metabolism of back reef and fore reef communities. Limnology and Oceanography 69, 533–547 (2024).
35.
Isaak, A. L. et al. Macroalgal presence decreases coral calcification rates more than ocean acidification. Coral Reefs 1–5 (2024).